Bui Lab Publications
For a comprehensive list of publication, go to Google Scholar Citation
2024
McCafferty, C.L., Papoulas, O., Lee, C., Bui, K.H., Taylor, D.W., Marcotte, E.M., Wallingford, J.B. An Amino Acid-Resolution Interactome for Motile Cilia Identifies the Sturcture and Function of Ciliopathy Protein Complexes. Developmental Cell.
2024
Sun, Y., Bakhyiari, S., Valente-Paterno, M., Wu, Y., Nishimura, Y., Shen., W., Law, C., Dhaliwal, J., Dai, D., Bui, K.H., Zerges, W. Chloroplast Biogenesis Involves Spatial Coordination of Nuclear and Organellar Gene Expression in Chlamydomonas. Plant Physiology.
2024
Gao, J., Tong M., Lee, C., Gaertig, J., Legal, T., Bui, K.H. DomainFit: Identification of Protein Domains in Cryo-EM Maps at Intermediate Resolution Using AlphaFold2-Predicted Models. Structure.
2024
Yang, S.K., Shintaroh, K., Black, C., Peri, K., Dai, D., Legal, T., Valente-Paterno, M., Gaertig, J., Bui, K.H. Effect of α-Tubulin Acetylation on the Doublet Microtubule Structure. ELife, vol. 12.
2023
Black, C., and Bui, K.H. Unveiling the Intriguing Role of FAP20 in Tubulin Recruitment at the Doublet Microtubule Inner Junctions. Structure, vol. 31, no. 12, pp. 1518–1519.
2023
Legal, T., Parra, M., Tong, M., Black, C., Joachimiak, E., Valente-Paterno, M., Lechtreck, K., Gaertig, J., Bui, K.H. CEP104/FAP256 and Associated Cap Complex Maintain Stability of the Ciliary Tip. Journal of Cell Biology, vol. 222, no. 11.
2023
McCafferty, C., Papoulas, O., Lee, C., Bui, K.H. Taylor, D.W., Marcotte, E., Wallingford, J.B. An amino acid-resolution interactome for motile cilia illuminates the structure and function of ciliopathy protein complexes. BioRxiv. ​
2023
Ghanaeian, A., Majhi, S., McCafferty, C., Nami, B., Black, C., Yand, S.K., Legal, T., Papoulas, O., Janowska, M., Valente-Paterno, M., Marcotte, E., Wloga, D., Bui, K.H. Integrated Modeling of the Nexin-Dynein Regulatory Complex Reveals Its Regulatory Mechanism. Nature Communications, vol. 14, no. 1, 15 Sept. 2023.​​
2023
Shintaroh, K., Black, C., Joachimiak, E., Yang, S.K., Legal, T., Peri, K., Khalifa, A., Ghanaeian, A., McCafferty, K., Valente-Paterno, M., De Bellis, C., Huynh, P., Fan, Z., Marcotte, E., Wloga, D., Bui, K.H. Native Doublet Microtubules from Tetrahymena Thermophila Reveal the Importance of Outer Junction Proteins. Nature Communications, vol. 14, no. 1, 15 Apr. 2023, p. 2168.​
2023
​Amro, J., Black, C., Jemouai, Z., Rooney, N., Daneault, C., Zeytuni, N., Ruiz, M., Bui, K.H. Cryo-EM Structure of the Agrobacterium Tumefaciens T-Pilus Reveals the Importance of Positive Charges in the Lumen. Structure, vol. 31, no. 4, 1 Apr. 2023, pp. 375-384.e4.
2023
Shintaroh, K., and Bui, K.H. Regulatory Mechanisms of the Dynein-2 Motility by Post-Translational Modification Revealed by MD Simulation. Scientific Reports, vol. 13, no. 1, 26.
2023
Bicka, M., Black, C., Ghanaeian, A., Joachimiak, E., Osinka, Anna., Majhi, S., Konopka. A., Bulska, E., Bui, K.H., Wloga, D. Heterogeneity of radial spokes structural components and associated enzymes in Tetrahymena cilia. BioRxiv. 08(11)551218.
2023
Bui, K.H., Wirschell, M. Ciliary asymmetries and their role in ciliary motility. Academic Press. The Chlamydomonas Sourcebook. pg. 231-245.
2022
Gorelik, A., Illes, K., Bui, K.H., Nagar, B. Structure of the mannose-6-phophate enzyme, GIcNAc-1-phosphotransferase. The Proceedings of the National Academy of Sciences. 119:e2203518119.
2022
Shobo, A., James, N., Dai, D., Rontgen, A., Black, C., Kwizera, J.R., Hancock, M.A., Bui, K.H., Multhaup, G. The Amyloid-β1-42-oligomer interacting peptide D-AIP possesses favorable biostability, pharmacokinetics, and brain region distribution. J Biol Chem. 298:101483.
2021
​Sun, Y., Bakhtitari, S., Valente-Paterno, M., Wu, Y., Law, C. Dai, D., Dhaliwal, J., Bui, K.H., Zerges, W. Chloroplast-localized translation for protein targeting in Chlmaydomonas reinhardtii. BioRxiv, 12(27):474283.
2021
Black, C., Dai, D., Peri, K., Ichikawa, M., Bui, K.H. Preparation of Doublet Microtubule Fraction for Single Particle Cryo-Electron Microscopy. BIO-PROTOCOL, vol. 11, no. 11.
2021
Khan, N., Pelletier, D., McAlear, T.S., Croteau, N., Veyron, S., Bayne, A.N., Black, C., Ichikawa, M., Khalifa, A.A.Z, Chaaban, S., Kurinov, I., Brouhard, G., Bechstedt, S., Bui, K.H., Trempe, J.F. Crystal structure of human PACRG in complex with MEIG1 reveals roles in axoneme formation and tubulin binding. Structure. 29(6):572-586.
2021
Kaur, S., Gomez-Blanco, J., Khalifa, A.A.Z, Adinarayanan, S., Sanchez-Garcia, R., Wrapp, D., McLellan, J.S., Bui, K.H., Vargas, J. Local computational methods to improve the interpretability and analysis of cryo-EM maps. Nat Comms. 12: 1240.
2021
Sheibani, S., Basu, K., Farnudi, A., Ashkarran, A., Ichikawa, M., Presley, J.F., Bui, K.H., Ejtehadi, M.R., Vali, H., Mahmoudi, M. Nanoscale characterization of the biomolecular corona by cryo-electron microscopy, cryo-electron tomography, and image simulation. Nat Comms. 12: 573.
2021
Kubo, S., Yang, S.K., Black, C., Dai, D., Valente, M., Gaertig, J., Ichikawa, M., Bui, K.H. Remodeling and activation mechanisms of outer arm dyneins revealed by cryo-EM. EMBO Reports. 22: e52911
2020
Dai, D., Ichikawa, M., Peri, K., Rebinsky, A., Bui, K.H.#. Identification and mapping of central pair proteins by proteomic analysis. Biophysics and Physicobiology. 17: 71-85
2020
Khalifa A.A.Z., Ichikawa, M., Dai, D., Black, C., Peri, K., McAlear, T.S., Kubo, S., Veyron, S., Yang, S.K., Vargas, J., Trempe, J.F., Bechstedt, B., Bui, K.H.# The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications. eLife. 9:e52760
2019
Leary, A., Sim, E., Nazarova, E., Shulist, K., Yang, S.K., Bui, K.H., Francois, P., Vogel, J. Successive Kinesin 5 microtubule cross-linking and sliding promote fast, irreversible formation of a stereotyped bipolar spindle. Current Biol. 29 (22):3825-37.
2019
Imhof, S., Zhang, J., Wang, H., Bui, K.H., Nguyen, H.K., Atanosov, I., Hui, W.H., Yang, S.K., Zhou, H. and Hill, K.L. Cryo electron tomography with Volta phase plate reveals novel structural foundations of axoneme motility in the pathogen Trypanosoma brucei. Elife. 8: e52058
2019
Yang, M., Chen, Y.S., Ichikawa, M., Calles-Garcia, D., Basu, K., Fakih, R., Bui, K.H., Gehring, K. Cryo-electron microscopy structures of ArnA, a key enzyme for polymyxin resistance, revealed unexpected oligomerizations and domain movements. J. Struct Biol. 208(1):43-50.
2019
Ichikawa, M. Khalifa, A., Shintaroh, K., Dai, D., Basu, K., Maghrebi, A., Vargas, J., Bui, K.H. Tubulin Lattice in Cilia Is in a Stressed Form Regulated by Microtubule Inner Proteins. Proceedings of the National Academy of Sciences, vol. 116, no. 40, 16 Sept. 2019, pp. 19930–19938.
2018
Chaaban, S., Jariwala, S., Hsu, C.T., Redemann, S., Kollman, J.M., Müller-Reichert, T., Sept, D., Bui, K.H., Brouhard, G.J. The structure and dynamics of C. elegans tubulin reveals the mechanistic basis of microtubule growth. Dev Cell. S1534-5807(18)30696-8.
2018
Athanasiadou, D., Jiang, W., Goldbaum, D., Saleem, A., Basu, K., Pacella, M.S., Böhm, C.F., Chromik, R.R, Hincke, M.T., Rodríguez-Navarro, A.B., Vali, H., Wolf, S.E., Gray, J.J., Bui, K.H. and McKee, M.D. Nanostructure, osteopontin, and mechanical properties of calcitic avian eggshell. Science Advances 4, no. 3, eaar321
2018
Ichikawa, M., Bui, K.H.#. Microtubule Inner Proteins: A Meshwork of Luminal Proteins Stabilizing the Doublet Microtubule. BioEssays. 40 (3): 1700209
2017
Kastritis, P.L., O’Reilly, F.J., Bock, T., Li, Y., Rogon, M.Z., Buczak, K., Romanow, N., Betts, M.J., Bui, K.H., Hagen, W.J., Hennrich, M.L., Mackmull, M., Rappsilber, J., Russel, R.B., Bork, P., Beck, M., Gavin, A. Capturing protein communities by structural proteomics in a thermophilic eukaryote. Mol Syst Biol. 13: 15035.
2017
Ichikawa, M., Liu, D., Kastritis, P.L., Basu, K., Hsu, T.C., Yang, S., Bui, K.H.# Subnanometer-resolution structure of the doublet microtubule reveals new classes of microtubule- associated proteins
. Nature Comms. 8: 15035.
2017
Tarry, J.M., Haque, S.A., Bui, K.H., Schmeing, T.M. X-ray crystallography and electron microscopy of cross- and multi-module nonribosomal peptide synthetase proteins reveal a flexible architecture, Structure. 25: 783-793.
2016
Otsuka S., Bui, K.H., Schorb, M., Hossain, M.J., Politi, A.Z., Koch, B., Eltsov, M., Beck, M., Ellenberg, J. Nuclear pore assembly proceeds by an inside-out extrusion of the nuclear envelope. eLife. 5: e19071.
2016
Hampoelz, B., Mackmull, M., Machado, P., Bui, K.H., Schieber, N., Santarella-Mellwig, R., Necakov, A., Philippe, J.M., Briggs, J.A.G., Lecuit, T., Schwab. Y., Beck, M. Pre-Assembled Nuclear Pores Insert from the ER into the Nuclear Envelope During Early Development. Cell. 166: 664-678
2016
Kosinski, J., Mosalaganti, S., von Appen, A., Teimer, R., DiGuilio, A.L., Wan, W., Bui, K.H., Hagen, W., Briggs, J.A.G., Glavy, J.S., Hurt, E., Beck, M. Molecular architecture of the inner ring scaffold of the human nuclear pore complex. Science. 352: 363-365. (Selected for Cover Art)
2015
von Appen, A., Kosinski, J., Sparks, L., Ori, A., DiGuilio, A.L., Vollmer, B., Mackmull, M., Banterle, N., Parca, L., Buczak, K., Mosalaganti, S., Hagen, W., Andres-Pons, A., Lemke, E.A., Bork, P., Antonin, W., Glavy, J.S., Bui, K.H.#, Beck, M.#. In situ structural analysis of the human nuclear pore complex. Nature. 526: 140-143.
(# Shared corresponding authors).
2015
Maheshwari, A., Obbineni, J.M., Bui, K.H., Shibata, K., Toyoshima, Y., Ishikawa, T. α- and β-tubulin lattice arrangement of the axonemal microtubule doublet and binding proteins revealed by single particle cryo-electron microscopy and tomography. Structure. 23: 1584-1595
2015
Gaik, M., Flemming, D., von Appen, A., Kastritis, P., Muecke, N., Fischer, J., Stelter, P., Ori, A., Bui, K.H., Bassler, J., Barbar, E., Beck, M., Hurt, E. Structural basis for assembly and function of the Nup82 complex in the nuclear pore scaffold. J. Cell Biol., 208: 283-97.